Best Invoicing Software for Czech Freelancers 2026: 7 Tools Compared

Searching for the "best invoicing software" for a self-employed person (OSVČ — the Czech term for a self-employed sole trader) in the Czech Republic doesn't return one obvious winner, because there isn't one. At least seven established tools compete side by side today — Fakturoid, iDoklad, Vyfakturuj.cz, SuperFaktura.cz, mPOHODA, Money S3, and Taxorio — and each one suits a different kind of business. What matters more than the name is how many invoices you issue a month, whether you're a VAT payer, and what you expect from expense tracking.

Below, each program is listed with its price, its free-plan limit, and its main strength and weakness, based on public price lists — Fakturoid, iDoklad and Vyfakturuj.cz prices checked on 16 October 2026, SuperFaktura.cz and mPOHODA on 16 October 2026, and Money S3 on 24 September 2026. Prices change over time, so verify them directly with each provider before you decide.

What to base your choice on: 7 questions before you decide

1. How many invoices do you issue each month?
2. Are you a VAT payer, a non-VAT payer, or on the lump-sum tax (paušální daň — a single fixed monthly payment that replaces income tax and both types of social contributions for eligible self-employed people)?
3. Do you need automatic payment matching and reminders, or do you track invoices manually?
4. Do you want to record received expense documents and have them read automatically by AI?
5. Do you need XML files ready for the VAT return and VAT control statement (kontrolní hlášení) on the tax authority's MOJE daně portal (the Financial Administration's e-filing portal)?
6. Do you hand records over to an accountant, and do you need an export into their software?
7. How much do you want to pay per year, and what happens to your data if you leave the program?

Seven invoicing programs at a glance

Fakturoid

Best for: self-employed people and smaller businesses who bank with one of the supported banks. From 164 CZK a month (Na lehko; 1,812 CZK a year billed annually); the free plan allows unlimited invoices but only 5 customers. Strength: payment matching with ten Czech banks (Fio also via API), plus its own MCP server for AI assistants. Weakness: payment matching and reminders only from the Na každý den tier at 231 CZK a month (2,532 CZK a year billed annually), no matching for banks outside its list (mBank, for example), and a custom export date range is capped at three months (exporting search results can cover a whole year).

iDoklad

Best for: small teams who want several users on one account. From 240 CZK a month (Základní; 2,244 CZK a year billed annually); the free plan allows max. 5 contacts and includes recurring invoices. Strength: a mobile app in every tier and direct bank-account matching from the Oblíbený tier. Weakness: bank matching, automatic reminders and AI document scanning only from 430 CZK a month (Oblíbený; 4,296 CZK a year billed annually).

Vyfakturuj.cz

Best for: self-employed people who want unlimited invoicing at a low price without full automation. From 195 CZK a month (Mini; 2,100 CZK a year billed annually); the free plan allows max. 5 customers and suppliers. Strength: matching with most banks via forwarded email notifications and automatic reminders, already in the lowest paid tier. Weakness: recurring invoices only from the Ideal tier at 350 CZK a month (3,588 CZK a year billed annually), and even there VAT filings come only as partially pre-filled drafts.

SuperFaktura.cz

Best for: self-employed people invoicing abroad too — documents are available in 14 languages. From 169 CZK a month (Základní; 129 CZK a month billed annually); the free plan allows max. 5 contacts. Strength: payment matching included from the lowest paid tier. Weakness: automatic reminders by email and SMS only from the Standardní tier at 339 CZK a month (279 CZK a month billed annually).

mPOHODA

Best for: self-employed people and businesses whose accountant already works in the POHODA accounting program. From 199 CZK a month (Basic; 1,990 CZK a year billed annually, prices effective from 1 September 2026); the free Start plan is limited to 100 issued invoices and 5 contacts. Strength: a direct connection to the POHODA accounting program, and a bank connection with payment matching already in the Start plan. Weakness: automated invoicing only from the Pro tier at 358 CZK a month (3,580 CZK a year billed annually); Start already sends the first payment request, the second and third reminders need Pro.

Money S3

Best for: self-employed people and businesses who want to keep their books — either simplified tax records or full double-entry bookkeeping — in one desktop program, including inventory and payroll. Price: the Basic edition is a one-off licence of 2,990 CZK, with updates at 1,690 CZK a year from the second year; Money S3 Start is free for 3 months. Inventory comes with the Economy edition (7,990 CZK), as do payroll and double-entry bookkeeping. Strength: the VAT return, VAT control statement, EC Sales List and income tax return already in the Basic edition, and a comprehensive accounting program for people who keep their own books or whose accountant already works in Money. Weakness: a higher upfront cost and a steeper learning curve than the online invoicing programs on this list.

Taxorio

Best for: self-employed people who want invoicing, expense tracking, and VAT-related paperwork in a single low-cost program. 69 CZK a month or 690 CZK a year excluding VAT; the free plan allows unlimited invoices for 5 clients in total and 5 expense documents a month; new accounts get their first 14 days of Pro free, no credit card. Strength: payment matching from any bank's email notifications, reminders, recurring invoices, and XML for the VAT return, the VAT control statement, and a basic income tax return scenario, all in a single 69-CZK tier. Weakness: the free plan is limited to 5 clients, no inventory, no One Stop Shop (OSS) scheme, and only one company per account.

Price comparison at a glance

The prices below are excluding VAT and reflect the lowest paid tier billed monthly.

The cost of automation: payment matching, reminders, and recurring invoices

If you need all three automation features at once, the differences between programs widen considerably.

By type of business

A new non-VAT payer with a handful of invoices a month

A free plan is enough here — Fakturoid, iDoklad, Vyfakturuj.cz, SuperFaktura.cz, and Taxorio all offer a free entry point with no credit card required. What decides it is the limit: the number of customers or contacts, which is 5 on four of the competing programs and on Taxorio too.

A freelancer with regular clients

Needs recurring invoices and an overview of who has paid. Vyfakturuj.cz and SuperFaktura.cz offer this combination from their mid tiers (350 and 339 CZK a month respectively, billed monthly), Taxorio for 69 CZK a month.

A tradesperson taking deposits

Issues deposit invoices, waits for payment, and needs bank matching on the go. Payment matching and mobile access matter most here — Fakturoid's and iDoklad's tiers with payment matching cost 231 and 430 CZK a month respectively, billed monthly, while Taxorio offers the same features for 69 CZK a month but without a native app in the app stores.

An online shop or team with several users

Needs inventory tracking, multiple users, and possibly payment gateways. Taxorio isn't the right choice here: it doesn't support inventory or multiple companies on one account. The higher tiers of Fakturoid or iDoklad, or Money S3, fit better. Vyfakturuj.cz's Profi offers more users and payment gateways, but doesn't list inventory.

A VAT payer

Needs an XML export for the VAT return and VAT control statement. Taxorio offers this in its Pro tier at 69 CZK a month, including a basic income tax return scenario; for the other programs, check the scope of VAT-related exports in the specific tier you're considering.

Someone on the lump-sum tax

Files no tax return or contribution statements, but still has to keep records of income and track the band limit. Taxorio has the lump-sum regime, including limit tracking, built in even on its free plan.

Before you decide

If you're weighing up Fakturoid and iDoklad specifically, a detailed price and feature comparison is in our article Fakturoid vs. iDoklad 2026. If you invoice as a non-VAT payer and don't want to pay for features you'll never use, read Invoicing software for non-VAT payers in Czechia 2026. A general price comparison is also available on our invoicing software comparison page. Whichever program you choose, the key is to pick based on your actual volume of invoices and clients, not on whichever name comes up most often in search results.

How Taxorio handles this

Taxorio belongs in this list as one of seven tools, not as a universal winner. Its advantage is a low price (69 CZK a month or 690 CZK a year excluding VAT) for a combination of payment matching, reminders, recurring invoices, AI receipt scanning even on the free plan, and XML exports for the VAT return, the VAT control statement, and a basic income tax return scenario.

The limits are just as real: the free plan limits invoicing to 5 clients, even though it doesn't cap the number of invoices, and there's no inventory or support for multiple companies on one account. Foreign-currency invoicing works (CZK, EUR, USD, GBP, CHF, PLN), but the One Stop Shop (OSS) scheme for selling to EU consumers does not. For an online shop with a team, or a business selling through OSS, Taxorio can't be recommended — Fakturoid, iDoklad, or Money S3 in a higher tier fit better there. You can try the free plan with no credit card at app.taxorio.cz/register.

Official sources

• Czech Financial Administration: guidance on invoicing (in Czech)
• Czech VAT Act (in Czech)
• Trade Licensing Portal (Portál živnostenského podnikání, in Czech)